# in Linux
conda activate iqtree2
iqtree -s mafft.fsa.Pseudomonas_genome_db_IP1 \
    -nt AUTO \
    -st AA \
	-B 1000 \
	-alrt 1000

PA5568.mafft-24.fsa

iqtree -s PA5568.mafft-24-renamed.fsa \
    -nt AUTO \
    -st AA \
	-B 1000 \
	-alrt 1000
